transcriptome aligner tophat v. 2.0.13 Search Results


transcriptome aligner tophat v. 2.0.13  (Broad Institute Inc)
90
Broad Institute Inc transcriptome aligner tophat v. 2.0.13
Venn diagram showing the distribution of differentially expressed genes (DEGs) among the <t>transcriptomes.</t> Note: AD, 56.33 mg/mL of α-pinene. AG, 214.5 mg/mL of α-pinene. CK, control.
Transcriptome Aligner Tophat V. 2.0.13, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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transcriptome aligner tophat v. 2.0.13 - by Bioz Stars, 2026-08
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Venn diagram showing the distribution of differentially expressed genes (DEGs) among the transcriptomes. Note: AD, 56.33 mg/mL of α-pinene. AG, 214.5 mg/mL of α-pinene. CK, control.

Journal: International Journal of Molecular Sciences

Article Title: Comparative Transcriptome Analysis of the Pinewood Nematode Bursaphelenchus xylophilus Reveals the Molecular Mechanism Underlying Its Defense Response to Host-Derived α-pinene

doi: 10.3390/ijms20040911

Figure Lengend Snippet: Venn diagram showing the distribution of differentially expressed genes (DEGs) among the transcriptomes. Note: AD, 56.33 mg/mL of α-pinene. AG, 214.5 mg/mL of α-pinene. CK, control.

Article Snippet: Filtered reads were aligned to the reference genome using the transcriptome aligner Tophat v. 2.0.13 (Broad Institute of MIT and Harvard, Cambridge, MA, USA).

Techniques: Control

GO assignment of the DEGs in the AD and AG transcriptomes. DEGs in the AD sample ( A ) and in the AG sample ( B ) had GO ID assignments mainly in three categories: cellular component, molecular function, and biological process.

Journal: International Journal of Molecular Sciences

Article Title: Comparative Transcriptome Analysis of the Pinewood Nematode Bursaphelenchus xylophilus Reveals the Molecular Mechanism Underlying Its Defense Response to Host-Derived α-pinene

doi: 10.3390/ijms20040911

Figure Lengend Snippet: GO assignment of the DEGs in the AD and AG transcriptomes. DEGs in the AD sample ( A ) and in the AG sample ( B ) had GO ID assignments mainly in three categories: cellular component, molecular function, and biological process.

Article Snippet: Filtered reads were aligned to the reference genome using the transcriptome aligner Tophat v. 2.0.13 (Broad Institute of MIT and Harvard, Cambridge, MA, USA).

Techniques: